Payroll software in India helps you stay compliant with Indian labour codes. We scanned features, benefits, and reviews of 20 different tools, and here are the top 5 winners. See if your ideal payroll software is on this list.
Our Top Picks for the Best Payroll Software in India
We didn’t just look at brochures. We examined features carefully and focused on the tiny details that actually matter when using the software daily.
Here are the winners:
1. NYGGS Payroll: The Best Payroll Software in India for Compliance
If you run a business in construction, mining, or manufacturing, you already know payroll is more complex. Contractors, daily wagers, shifting job sites—it’s not simple.
NYGGS payroll software in India is built specifically for such industries. It handles tax filings and daily attendance efficiently, whether you manage 10 employees or 10,000.
It is especially strong in areas like geo-fenced attendance and contractor management.
Why It Wins
- Auto-Calculations: Pulls data directly from attendance systems. No manual entry required.
- Full Compliance: Automatically handles TDS, PF, and ESIC in line with Indian tax laws.
- Security: Bank-grade data protection ensures sensitive information remains safe.
- Best For: Heavy industries and compliance-driven businesses.
2. HRone: Top Payroll Software in India for Automation
HRone is known for its “one-click payroll” functionality. It allows businesses to process salaries quickly while minimising errors.
The system integrates smoothly with Tally and SAP, making it ideal for finance teams already using these tools.
The Good Stuff
- Zero Errors: Smart auto-calculator catches mistakes before payroll is finalised.
- Advanced Reports: Provides detailed salary trend analysis and cost insights.
- Mobile App: Employees can access payslips directly from their phones.
- Note: The interface may take time to learn due to extensive features.
3. Darwinbox – The Ultimate Payroll Platform for Enterprise Clients
Darwinbox is not just payroll software in India – it’s a full-on HR tech ecosystem.
Their RIVeR (Review, Initiate, Verify, Release) framework makes payroll a structured and super easy-to-audit process.
Everything’s in one place – no more silly email chains or confusion.
Key Features
- Get all your HR, payroll and finance data under one roof.
- 200+ APIs and tax ecosystem integrations to make things easier
- Employee experience for a mobile-first world
- Payroll records that are practically audit-proof
- Advanced payroll cost analytics to help you save
- Best for: Darwinbox is best for companies that are looking for a modern, scalable payroll system in India and want something that actually fits their needs.
4. Zoho Payroll: Reliable Cloud-Based Payroll Software in India
Zoho Payroll is reliable, affordable, and cloud-based. It integrates seamlessly with Zoho Books and Zoho People.
This makes it ideal for businesses already within the Zoho ecosystem.
Why We Like It
- Simple Setup: No technical expertise required.
- Statutory Compliance: Automatically handles PT, PF, LWF, and income tax calculations.
- Affordable: Great for small teams planning to scale.
- Best For: Small and growing businesses.
5. RazorpayX: Fast Online Payroll Software in India
RazorpayX combines payroll and banking in one platform, designed for fast-moving startups.
Unlike traditional tools that generate files for bank uploads, RazorpayX processes payments directly.
Key Advantages
- Direct Bank Integration: Salaries are processed instantly through the platform.
- 3-Click Payroll: Payroll processing is quick and streamlined.
- Compliance Automation: Handles TDS and PF payments automatically.
- Transparent Pricing: No hidden software fees (transaction fees may apply).
- Best For: Modern startups seeking integrated banking and payroll.
6. Keka: Smart Payroll Management Software in India
Keka emphasises employee experience alongside payroll processing.
It allows employees to view payslips, apply for leave, and understand tax breakdowns easily within a clean and modern interface.
Why Employees Love It
- User-Friendly Interface: Modern, intuitive design.
- Transparency: Clear tax breakdowns reduce confusion.
- All-in-One HR System: Integrates leave, attendance, and payroll.
- Note: Pricing may be higher, and minimum employee limits may apply.
7. PeopleStrong – Payroll Analytics & Reporting, But Not Without Some Trade-Offs
If you love nothing more than staring at dashboards and reports, PeopleStrong is your friend.
It connects all your HR and payroll systems and offers a whopping 350+ pre-built reports – a godsend for finance teams who need visibility.
Of course, there are some trade-offs – attendance and leave APIs are not really the best, and big payroll changes can take forever to sync.
Key Features
- Payroll access for employees 24/7
- Detailed audit trails
- Customisable dashboards to make your life easier
- Automated TDS, EPF & ESI for you
8. FactorHR – Best for Arrears & Retroactive Payroll
FactoHR shines where most tools struggle: arrears.
Missed attendance? Salary revision? Holiday corrections? FactorHR payroll software in India handles all of it automatically.
Its wizard-driven setup is beginner-friendly, especially for SMBs.
Key Features
- Custom salary structures
- Transparent salary revision tracking
- Integration with banks, SAP, and Oracle
- Automated statutory compliance
- Best for: SMBs with frequent payroll adjustments
How to Choose the Right Online Payroll Software in India
Don’t choose the first option you see. Consider these factors carefully:
- Team Size: Zoho works well for small teams, while HRone and Keka are better for scaling businesses.
- Mobile Accessibility: Ensure employees can access payroll details via mobile apps.
- Customer Support: Reliable human support is crucial, especially during month-end payroll processing.
Concluding Notes
Finding the right payroll software in India transforms how your business operates.
You stop dreading month-end processing. Your team gets paid on time. Compliance becomes manageable.
Choose the solution that fits your company culture and operational needs—then focus on growing your business.